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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123865401_123866878_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123865401 - 123866878
Intron Length:
1478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
ATTGTTTTATTT
Flanking Amino Acid:
GSPYSPVQSQQIPSAIAGTL
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
87.6
0.84
0.7
81.3
36.3
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
55.4
0.25
1.6
72.97
39.1

Associated Gene:

Gene:
PKNOX1
Ensembl Gene ID:
ENSAPLG00000009259
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009662
123857314 - 123890232
32919