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Intron Name: Anas_platyrhynchos_platyrhynchos_1_123867050_123879974_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

123867050 - 123879974

Intron Length:

12925

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTGTA

5'SS Class:

strong_major

3'SS Sequence:

ATTCACTCCCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTCAC

U12 Branch Point Sequence:

TTTTTCCCAATT

Flanking Amino Acid:

FCEDPETDNLMVKAIQVLRI

Intron Amino Acid Position:

118

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.8

83.2

28.5

Major BPS

73.5

0.58

0.9

75.4

28.3

Major PPT

0.41

0.8

59.3

37.2

Minor 5ss

36.4

-1.5

3.3

45.9

43.7

Minor BPS

61.1

0.43

1.9

84.67

35.9

Associated Gene:

Gene:

PKNOX1

Ensembl Gene ID:

ENSAPLG00000009259

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009662

123857314 - 123890232

32919