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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123881447_123884678_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123881447 - 123884678
Intron Length:
3232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AGATCTACAAAT
Flanking Amino Acid:
SIDNYQDGQQMQVVTELKTE
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
88.3
0.86
0.7
83.3
25.2
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
46.2
-0.2
1.8
63.23
40.1

Associated Gene:

Gene:
PKNOX1
Ensembl Gene ID:
ENSAPLG00000009259
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009662
123857314 - 123890232
32919