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Intron Name: Anas_platyrhynchos_platyrhynchos_1_123884781_123889318_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

123884781 - 123889318

Intron Length:

4538

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGCAGC

5'SS Class:

major

3'SS Sequence:

TTCTTTTTTAAAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAC

U12 Branch Point Sequence:

TCTTTTTTAAAG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

63.1

43.4

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

83.2

0.75

0.9

85.5

26.4

Minor 5ss

33.8

-1.8

2.8

34.8

41.4

Minor BPS

66.4

0.38

1.4

67.62

40.4

Associated Gene:

Gene:

PKNOX1

Ensembl Gene ID:

ENSAPLG00000009259

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009662

123857314 - 123890232

32919