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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123889407_123889555_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
123889407 - 123889555
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTATTAAA
5'SS Class:
major
3'SS Sequence:
TGTTGGTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TCCTCCTGAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.2
77.2
32.5
Major BPS
69.6
0.49
1
59.5
39
Major PPT
70.3
0.46
1
61.7
44.5
Minor 5ss
31.5
-2.1
2.4
34.5
41
Minor BPS
71.9
0.67
1.4
75.11
41.5

Associated Gene:

Gene:
PKNOX1
Ensembl Gene ID:
ENSAPLG00000009259
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009662
123857314 - 123890232
32919