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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12389309_12390856_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12389309 - 12390856
Intron Length:
1548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATG
5'SS Class:
strong_major
3'SS Sequence:
TACAACCCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTTCCCTAAAT
Flanking Amino Acid:
EGGKAAVVKQIEEINEQIRR
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.7
34.8
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
68.5
0.42
0.9
63
38.8
Minor 5ss
39.4
-1.2
2.8
51.2
45.3
Minor BPS
74.9
0.86
1.7
94.58
31.8

Associated Gene:

Gene:
DNAJC2
Ensembl Gene ID:
ENSAPLG00000011979
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012528
12386069 - 12401877
15809