About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12390927_12391012_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12390927 - 12391012
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AATTTATTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGTAACTTAATA
Flanking Amino Acid:
EKLCDRLELASLQCLNEALT
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.6
97
9.5
Major BPS
80
0.75
1
78.6
31
Major PPT
77.8
0.63
0.9
75.1
39
Minor 5ss
46.1
-0.4
2.8
66.9
44.4
Minor BPS
66.8
0.52
1.5
74.34
36.8

Associated Gene:

Gene:
DNAJC2
Ensembl Gene ID:
ENSAPLG00000011979
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012528
12386069 - 12401877
15809