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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12391102_12391351_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12391102 - 12391351
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTAAA
5'SS Class:
major
3'SS Sequence:
TTTCTGCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAGAA
U12 Branch Point Sequence:
AGTTCAGGAACT
Flanking Amino Acid:
ERQKLRTTCKNWNYFSDNEA
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
77.8
31.4
Major BPS
54.8
0.12
1.2
52.7
43.2
Major PPT
85.6
0.8
0.8
77.2
37.1
Minor 5ss
41.2
-1
2.5
51
45.5
Minor BPS
47.8
-0
2.3
73.82
42.2

Associated Gene:

Gene:
DNAJC2
Ensembl Gene ID:
ENSAPLG00000011979
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012528
12386069 - 12401877
15809