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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123922811_123923284_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123922811 - 123923284
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTCAGCGGA
5'SS Class:
major
3'SS Sequence:
TTTTTACTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTTACT
Flanking Amino Acid:
KTPASTALTRGEGDLFVYDC
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.4
0.32
1.4
54.2
45.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.3
0.82
0.7
81.7
28.9
Minor 5ss
30.7
-2.2
3.2
30
43
Minor BPS
74
0.84
1.5
91.27
31.8

Associated Gene:

Gene:
WDR4
Ensembl Gene ID:
ENSAPLG00000007171
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007471
123922401 - 123940648
18248