Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123925498_123927693_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

123925498 - 123927693

Intron Length:

2196

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCAG

5'SS Class:

strong_major

3'SS Sequence:

ATTTTTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAA

U12 Branch Point Sequence:

CATGTTCAAACT

Flanking Amino Acid:

TKPSWECISIRSVNRRCTSL

Intron Amino Acid Position:

207

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

69.6

42.7

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

91.3

0.93

0.7

89.4

26.5

Minor 5ss

30.1

-2.3

3.2

37.6

47.1

Minor BPS

43.9

-0.3

60.44

43.7

Associated Gene:

Gene:

WDR4

Ensembl Gene ID:

ENSAPLG00000007171

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007471

123922401 - 123940648

18248