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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123939650_123940552_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123939650 - 123940552
Intron Length:
903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
ATGCTCAGAAGC
Flanking Amino Acid:
LYRPCDGQWKPVPDDEGLQR
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.4
33.5
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
83.4
0.75
0.7
76.5
32.1
Minor 5ss
37
-1.5
3.1
51.8
44.8
Minor BPS
42.7
-0.5
1.9
51.82
38.9

Associated Gene:

Gene:
WDR4
Ensembl Gene ID:
ENSAPLG00000007171
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007471
123922401 - 123940648
18248