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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12394489_12395201_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12394489 - 12395201
Intron Length:
713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
ATATTTAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATATTTAATT
Flanking Amino Acid:
FEEVDAFYSFWYNFDSWREF
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.7
34.9
Major BPS
100
1.24
0.5
100
0
Major PPT
70
0.45
1
68.5
41.6
Minor 5ss
39.7
-1.2
2.8
46.1
43.6
Minor BPS
72.9
0.8
1.4
85.75
34.2

Associated Gene:

Gene:
DNAJC2
Ensembl Gene ID:
ENSAPLG00000011979
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012528
12386069 - 12401877
15809