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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12395283_12396637_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12395283 - 12396637
Intron Length:
1355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCTTGAATA
Flanking Amino Acid:
VFSPVFDRNARWSNKKNVPK
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
77.9
38.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
87.8
0.85
0.8
85.3
34.2
Minor 5ss
39.5
-1.2
3.2
55.8
48.4
Minor BPS
71.8
0.68
1.3
78.6
31.3

Associated Gene:

Gene:
DNAJC2
Ensembl Gene ID:
ENSAPLG00000011979
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012528
12386069 - 12401877
15809