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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123958085_123959630_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123958085 - 123959630
Intron Length:
1546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCAAAT
U12 Branch Point Sequence:
ACAGCGCTAACG
Flanking Amino Acid:
LKQIDDAMRELQQKKNDSLT
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
74
38.4
Major BPS
62.1
0.3
1.2
67.3
37.8
Major PPT
80.5
0.69
0.7
72.7
32.1
Minor 5ss
34.1
-1.8
3.2
46.7
48.6
Minor BPS
42.2
-0.7
2.4
47.03
45.7

Associated Gene:

Gene:
PDE9A
Ensembl Gene ID:
ENSAPLG00000007348
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007672
123958034 - 123998594
40561