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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123961284_123962466_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123961284 - 123962466
Intron Length:
1183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTGCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TATATGTGAACA
Flanking Amino Acid:
DQDQFKQIRQGIITLILATD
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
81
0.7
0.9
77.4
36.9
Minor 5ss
43.2
-0.7
2.9
57.1
47.2
Minor BPS
48.7
-0.1
2.2
66.03
40

Associated Gene:

Gene:
PDE9A
Ensembl Gene ID:
ENSAPLG00000007348
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007672
123958034 - 123998594
40561