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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123964291_123966900_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123964291 - 123966900
Intron Length:
2610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
CCATCTTTGACC
Flanking Amino Acid:
INPITLKRWLLCIHDNYRNN
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
85.1
0.79
0.7
79.7
25.6
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
66.2
0.49
1.3
65.76
40.6

Associated Gene:

Gene:
PDE9A
Ensembl Gene ID:
ENSAPLG00000007348
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007672
123958034 - 123998594
40561