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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123969725_123971922_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123969725 - 123971922
Intron Length:
2198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTGC
5'SS Class:
major
3'SS Sequence:
TTTTTATCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTTTATCT
Flanking Amino Acid:
PRRDVPSYPKYMLSQETIEA
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65
42.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.4
0.91
0.7
85.8
27.4
Minor 5ss
36
-1.6
3.5
50.3
46.3
Minor BPS
68.7
0.66
1.5
83.95
37.1

Associated Gene:

Gene:
PDE9A
Ensembl Gene ID:
ENSAPLG00000007348
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007672
123958034 - 123998594
40561