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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123972005_123975029_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123972005 - 123975029
Intron Length:
3025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTCCCTCAATA
Flanking Amino Acid:
MREEMAARSSRTTCPCKYSF
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
100
1.24
0.5
100
0
Major PPT
83.3
0.75
0.8
74.8
39.5
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
67.8
0.56
1.5
76.03
34.7

Associated Gene:

Gene:
PDE9A
Ensembl Gene ID:
ENSAPLG00000007348
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007672
123958034 - 123998594
40561