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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123978563_123979378_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123978563 - 123979378
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
ATGACATTAATC
Flanking Amino Acid:
LLGQIAEQFSRVFKINELKT
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.9
40
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
88.9
0.88
0.7
81
36.6
Minor 5ss
36.9
-1.5
3.3
50.4
46.2
Minor BPS
59.5
0.28
1.6
66.94
38.5

Associated Gene:

Gene:
PDE9A
Ensembl Gene ID:
ENSAPLG00000007348
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007672
123958034 - 123998594
40561