Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123979434_123984528_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

123979434 - 123984528

Intron Length:

5095

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAACAA

5'SS Class:

strong_major

3'SS Sequence:

TCTGTTGTTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTCATTTTGT

Flanking Amino Acid:

VIPVATGQLSDKEELFQNLL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

70.2

35.7

Major BPS

100

1.24

0.5

100

Major PPT

78.6

0.64

0.9

76.9

37.3

Minor 5ss

30.6

-2.2

3.1

38.6

46.4

Minor BPS

39.3

-0.7

3.8

77.25

44.9

Associated Gene:

Gene:

PDE9A

Ensembl Gene ID:

ENSAPLG00000007348

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007672

123958034 - 123998594

40561