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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123984573_123986111_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123984573 - 123986111
Intron Length:
1539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCGT
5'SS Class:
strong_major
3'SS Sequence:
CCGACTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
CTAACATCAACC
Flanking Amino Acid:
IDPTMPANSERSPYKVIPVA
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
72.7
44.5
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
71.3
0.48
0.9
61.2
40
Minor 5ss
39.6
-1.2
3.1
56.8
47.4
Minor BPS
49.4
-0
1.9
62
42.6

Associated Gene:

Gene:
PDE9A
Ensembl Gene ID:
ENSAPLG00000007348
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007672
123958034 - 123998594
40561