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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124014949_124017301_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124014949 - 124017301
Intron Length:
2353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
ACTCTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
ACTCTCTTTACA
Flanking Amino Acid:
LMVADACALLFLLRLIQKEL
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
73.5
37.2
Major BPS
66.3
0.41
1
61
37.5
Major PPT
82.6
0.73
0.8
76.1
31.8
Minor 5ss
39.7
-1.2
3
51.9
39.9
Minor BPS
58.6
0.26
1.6
66.6
39.4

Associated Gene:

Gene:
SLC37A1
Ensembl Gene ID:
ENSAPLG00000007435
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033670
124014284 - 124046969
32686
ENSAPLT00000022910
124012491 - 124046969
34479
ENSAPLT00000020838
124012491 - 124046969
34479
ENSAPLT00000007781
124014284 - 124046969
32686
ENSAPLT00000034121
124014284 - 124046969
32686