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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124019942_124020604_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124019942 - 124020604
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAGTT
5'SS Class:
major
3'SS Sequence:
TTCATTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GGTATTATAACA
Flanking Amino Acid:
GMMLLLAAPTLYMFSAVSKM
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
73
36.4
Major BPS
100
1.24
0.5
100
0
Major PPT
88.5
0.87
0.7
84
30.8
Minor 5ss
38.6
-1.3
3.6
62
43.4
Minor BPS
51
0.03
1.6
62.39
37.3

Associated Gene:

Gene:
SLC37A1
Ensembl Gene ID:
ENSAPLG00000007435
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007781
124014284 - 124046969
32686
ENSAPLT00000034121
124014284 - 124046969
32686
ENSAPLT00000033670
124014284 - 124046969
32686
ENSAPLT00000022910
124012491 - 124046969
34479
ENSAPLT00000020838
124012491 - 124046969
34479