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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124022036_124023523_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124022036 - 124023523
Intron Length:
1488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
AATTATGGAATT
Flanking Amino Acid:
FWLPLYITNVEHLDAKRAGD
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
85.3
32.2
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
77.9
0.63
0.9
73.6
37
Minor 5ss
39.9
-1.1
2.8
46.6
41.8
Minor BPS
44.9
-0.3
2.1
65.36
39.3

Associated Gene:

Gene:
SLC37A1
Ensembl Gene ID:
ENSAPLG00000007435
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022910
124012491 - 124046969
34479
ENSAPLT00000020838
124012491 - 124046969
34479
ENSAPLT00000007781
124014284 - 124046969
32686
ENSAPLT00000034121
124014284 - 124046969
32686
ENSAPLT00000033670
124014284 - 124046969
32686