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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124025230_124028331_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
124025230 - 124028331
Intron Length:
3102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
GGGGAAATCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TCTTTTGTATAT
Flanking Amino Acid:
LNAKEASKPQDPEMQHLLID
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
50.5
0.01
1.1
40.3
42.6
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
45.5
-0.2
2.2
67.78
43.7

Associated Gene:

Gene:
SLC37A1
Ensembl Gene ID:
ENSAPLG00000007435
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022910
124012491 - 124046969
34479
ENSAPLT00000020838
124012491 - 124046969
34479
ENSAPLT00000007781
124014284 - 124046969
32686
ENSAPLT00000034121
124014284 - 124046969
32686