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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124028416_124030447_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124028416 - 124030447
Intron Length:
2032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
AGCAACAAAAGT
Flanking Amino Acid:
EPSISTEFIVSSNAFLNGAS
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
84.9
26.3
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
32.1
-2
2.8
39.2
40.5
Minor BPS
37.1
-0.9
2.1
49.83
43.1

Associated Gene:

Gene:
SLC37A1
Ensembl Gene ID:
ENSAPLG00000007435
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034121
124014284 - 124046969
32686