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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124030487_124033596_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124030487 - 124033596
Intron Length:
3110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TGTTTGTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATCAC
U12 Branch Point Sequence:
CTTGGATGAATT
Flanking Amino Acid:
DISCSSTPSSHGHEPSISTE
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
70.6
35.4
Major BPS
60.6
0.26
1.3
65.7
41
Major PPT
86
0.81
0.8
80.6
37
Minor 5ss
34
-1.8
3.2
40.8
45.4
Minor BPS
44.8
-0.3
2.2
65.49
45.3

Associated Gene:

Gene:
SLC37A1
Ensembl Gene ID:
ENSAPLG00000007435
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034121
124014284 - 124046969
32686