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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124033635_124034399_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124033635 - 124034399
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TACTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
TTCAGTTTAACT
Flanking Amino Acid:
GIFCFLFLIEHPKDISCSST
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.3
78.8
35.5
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
76.3
0.59
1
72.8
42
Minor 5ss
36.7
-1.5
3.3
49.9
39.7
Minor BPS
63.3
0.49
1.8
80.13
42.2

Associated Gene:

Gene:
SLC37A1
Ensembl Gene ID:
ENSAPLG00000007435
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033670
124014284 - 124046969
32686
ENSAPLT00000022910
124012491 - 124046969
34479
ENSAPLT00000020838
124012491 - 124046969
34479
ENSAPLT00000007781
124014284 - 124046969
32686
ENSAPLT00000034121
124014284 - 124046969
32686