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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12403415_12406487_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12403415 - 12406487
Intron Length:
3073

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCTGCCGGC
5'SS Class:
weak_major
3'SS Sequence:
ATTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
AGTTGCAAAATC
Flanking Amino Acid:
GEGPPPAGGEGQSTYSRQIK
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.8
0.23
1.4
55
43.8
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
88.9
0.88
0.7
81.3
35.7
Minor 5ss
26.9
-2.7
4.2
41.8
45
Minor BPS
44.4
-0.4
2.2
58.28
40.8

Associated Gene:

Gene:
PSMC2
Ensembl Gene ID:
ENSAPLG00000011918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012451
12403316 - 12413116
9801