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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124036473_124037978_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124036473 - 124037978
Intron Length:
1506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCACA
5'SS Class:
strong_major
3'SS Sequence:
TGTATACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
HNLWFYIMAQIANGLVQTTG
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.6
40.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
78.6
0.64
0.9
74.5
40.2
Minor 5ss
38.3
-1.3
3.1
49.3
46.7
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
SLC37A1
Ensembl Gene ID:
ENSAPLG00000007435
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033670
124014284 - 124046969
32686
ENSAPLT00000022910
124012491 - 124046969
34479
ENSAPLT00000020838
124012491 - 124046969
34479
ENSAPLT00000007781
124014284 - 124046969
32686
ENSAPLT00000034121
124014284 - 124046969
32686