About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124043799_124043893_R


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
5UTR

Intron Coordinates:
124043799 - 124043893

Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTGAAAGAA

5'SS Class:
major

3'SS Sequence:
ACATTCTGAACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TACACAT

U12 Branch Point Sequence:
ACATTCTGAACA

Flanking Amino Acid:
5UTR

Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77.7
0.65
0.9
69.8
29.2

Major BPS
69.9
0.49
1
75.2
29.8

Major PPT
63.1
0.3
1.1
58.5
41.2

Minor 5ss
23.6
-3
3.1
28.7
43.6

Minor BPS
63.2
0.41
1.4
67.28
38.8

Associated Gene:

Gene:
SLC37A1

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

124014284 - 124046969
32686