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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124055449_124055594_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
124055449 - 124055594
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTCCGGCGG
5'SS Class:
weak_major
3'SS Sequence:
CACGTTTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TGTGTTTTATCA
Flanking Amino Acid:
EAEEAEADLGEYDGERNSAG
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.5
0.04
1.4
37.2
47.4
Major BPS
78.3
0.7
1
80
32.1
Major PPT
68.2
0.41
1
66.3
39.2
Minor 5ss
24.1
-3
3.1
21.5
37.2
Minor BPS
55.5
0.17
1.7
66.98
40

Associated Gene:

Gene:
RSPH1
Ensembl Gene ID:
ENSAPLG00000007969
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034072
124055329 - 124061168
5840
ENSAPLT00000032686
124055329 - 124062797
7469
ENSAPLT00000008276
124055329 - 124062797
7469