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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124055709_124055834_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124055709 - 124055834
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTGG
5'SS Class:
major
3'SS Sequence:
CAATATGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATCTATCC
Flanking Amino Acid:
EYEHSLRNGQGTYRFKNGAR
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
61.3
45.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.1
0.45
1
65.6
44.6
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
49.8
-0
2.1
72.04
39

Associated Gene:

Gene:
RSPH1
Ensembl Gene ID:
ENSAPLG00000007969
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008276
124055329 - 124062797
7469
ENSAPLT00000034072
124055329 - 124061168
5840
ENSAPLT00000032686
124055329 - 124062797
7469