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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124057220_124060320_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124057220 - 124060320
Intron Length:
3101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
AGTTGTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
AGATCCTGGATT
Flanking Amino Acid:
RYRGKFLNGNDKGEEEEEEE
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
78.2
36.4
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
74.2
0.54
0.9
70.7
40.5
Minor 5ss
38.7
-1.3
3.4
53.8
43.6
Minor BPS
60
0.4
1.5
71.86
38.7

Associated Gene:

Gene:
RSPH1
Ensembl Gene ID:
ENSAPLG00000007969
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032686
124055329 - 124062797
7469