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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12406570_12407252_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12406570 - 12407252
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTTC
5'SS Class:
weak_major
3'SS Sequence:
GTGTTTTACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TGTGTTTTACCT
Flanking Amino Acid:
QLLKKINELTGIKESDTGLA
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.9
36.3
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
68.9
0.43
1
62.5
43.4
Minor 5ss
72.3
0.75
1.7
78.8
35.5
Minor BPS
57.7
0.32
1.7
75.46
41.9

Associated Gene:

Gene:
PSMC2
Ensembl Gene ID:
ENSAPLG00000011918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012451
12403316 - 12413116
9801