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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12407353_12407711_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12407353 - 12407711
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTGTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
GTGGCATTAATT
Flanking Amino Acid:
LQSEQPLQVARCTKIINADS
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
71.1
0.47
1
70.8
39.8
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
59.4
0.37
1.7
73.76
43.2

Associated Gene:

Gene:
PSMC2
Ensembl Gene ID:
ENSAPLG00000011918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012451
12403316 - 12413116
9801