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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124074667_124076866_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124074667 - 124076866
Intron Length:
2200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TGTGATTTTATT
Flanking Amino Acid:
EASYKIDTSYRSNIPLSSLV
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
31.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
78.5
0.64
1
78.3
39.6
Minor 5ss
35.4
-1.7
3.2
50.9
45.5
Minor BPS
48.5
-0
1.9
69.16
42

Associated Gene:

Gene:
UBASH3A
Ensembl Gene ID:
ENSAPLG00000008138
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008476
124072912 - 124093198
20287