Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124078269_124078953_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

124078269 - 124078953

Intron Length:

685

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGGTGG

5'SS Class:

strong_major

3'SS Sequence:

CTGTTCCCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

CGATTTGTAAAA

Flanking Amino Acid:

CCGIFQSRLIGEALLDQEVA

Intron Amino Acid Position:

431

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

70.4

42.5

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

70.9

0.47

0.9

63.6

38.2

Minor 5ss

36.1

-1.6

3.3

46.8

48.5

Minor BPS

45.2

-0.3

53.23

39.2

Associated Gene:

Gene:

UBASH3A

Ensembl Gene ID:

ENSAPLG00000008138

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008476

124072912 - 124093198

20287