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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12407844_12409932_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12407844 - 12409932
Intron Length:
2089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TATTCTTTATTT
Flanking Amino Acid:
PTDIEEGMRVGVDRNKYQIH
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
74.1
38.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
80.9
0.69
0.8
77.5
29.8
Minor 5ss
38.3
-1.3
2.8
40.3
45.6
Minor BPS
71.2
0.74
1.5
84.84
36

Associated Gene:

Gene:
PSMC2
Ensembl Gene ID:
ENSAPLG00000011918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012451
12403316 - 12413116
9801