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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124083702_124084569_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124083702 - 124084569
Intron Length:
868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTCA
5'SS Class:
major
3'SS Sequence:
TGCCCTTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGACCAA
U12 Branch Point Sequence:
CCAGCCTGACCA
Flanking Amino Acid:
SRDMRFVHYQTLRALFQYKP
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.3
38.7
Major BPS
46.5
-0.2
1.3
52.8
42.7
Major PPT
73.3
0.52
0.8
64.9
36.3
Minor 5ss
36
-1.6
3.4
48.5
47.2
Minor BPS
46.3
-0.2
1.9
52.45
45.5

Associated Gene:

Gene:
UBASH3A
Ensembl Gene ID:
ENSAPLG00000008138
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008476
124072912 - 124093198
20287