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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124090110_124092985_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124090110 - 124092985
Intron Length:
2876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTTTGTTATTC
Flanking Amino Acid:
LLAKGFPAHIAQKALAATGQ
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.3
77.8
38.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
84.8
0.78
0.7
77.9
36.6
Minor 5ss
37.2
-1.5
2.9
46.9
41.8
Minor BPS
49.5
-0
2.2
67.76
38.6

Associated Gene:

Gene:
UBASH3A
Ensembl Gene ID:
ENSAPLG00000008138
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008476
124072912 - 124093198
20287