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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124095020_124096089_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124095020 - 124096089
Intron Length:
1070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTGATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TCCTGTTGATCC
Flanking Amino Acid:
MASQEEAQETNPTTGS
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
70.1
0.45
1
61.3
43.8
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
44.4
-0.4
2
54.17
44.3

Associated Gene:

Gene:
TMPRSS3
Ensembl Gene ID:
ENSAPLG00000008634
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008983
124094808 - 124113907
19100