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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124098137_124098959_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124098137 - 124098959
Intron Length:
823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCATTCTTGCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
VILAVAIGLGVQYNCIGKFR
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
100
1.24
0.5
100
0
Major PPT
70.8
0.47
1
65.8
40.7
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
TMPRSS3
Ensembl Gene ID:
ENSAPLG00000008634
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008983
124094808 - 124113907
19100