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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124099744_124100960_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124099744 - 124100960
Intron Length:
1217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATG
5'SS Class:
strong_major
3'SS Sequence:
GGTTTATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TATGGTTTATTT
Flanking Amino Acid:
NTTCKHLGFSSYVSSGYLPV
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
80.4
0.68
0.9
73.8
40.8
Minor 5ss
43.2
-0.7
2.9
57.1
47.2
Minor BPS
47.8
-0
2
68.17
43.6

Associated Gene:

Gene:
TMPRSS3
Ensembl Gene ID:
ENSAPLG00000008634
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008983
124094808 - 124113907
19100