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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124101087_124102074_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124101087 - 124102074
Intron Length:
988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACACTTC
5'SS Class:
major
3'SS Sequence:
GTCTTCATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTAAACTGAAAC
Flanking Amino Acid:
VTSLHNATNLREECTSGNVI
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
66.7
40.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
72.3
0.5
0.8
70.4
34.9
Minor 5ss
46.7
-0.3
3.2
67.5
43.9
Minor BPS
49.6
-0
1.8
64.17
40

Associated Gene:

Gene:
TMPRSS3
Ensembl Gene ID:
ENSAPLG00000008634
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008983
124094808 - 124113907
19100