About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12410249_12410478_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12410249 - 12410478
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CCCACCATTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TAATCTTTGATG
Flanking Amino Acid:
REVVETPLLHPERFVNLGIE
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.5
27.7
Major BPS
84
0.85
0.9
75
39.9
Major PPT
69.1
0.43
0.9
60.8
33.7
Minor 5ss
42.9
-0.8
2.8
57.1
40.8
Minor BPS
65.1
0.33
1.3
63.66
38.6

Associated Gene:

Gene:
PSMC2
Ensembl Gene ID:
ENSAPLG00000011918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012451
12403316 - 12413116
9801