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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12410644_12411148_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12410644 - 12411148
Intron Length:
505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
AAAACTTTGAGG
Flanking Amino Acid:
SELVQKYVGEGARMVRELFE
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
46.9
-0.3
1.7
46.89
39.9

Associated Gene:

Gene:
PSMC2
Ensembl Gene ID:
ENSAPLG00000011918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012451
12403316 - 12413116
9801