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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124108608_124110955_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124108608 - 124110955
Intron Length:
2348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGAAT
U12 Branch Point Sequence:
TATGCTTGAATA
Flanking Amino Acid:
FLDWIHEQMEREELQT*
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
77.3
33.4
Major BPS
62.3
0.31
1.4
73.3
39.1
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
43.3
-0.7
3.3
63.6
48.1
Minor BPS
60.6
0.33
1.5
69.12
37.5

Associated Gene:

Gene:
TMPRSS3
Ensembl Gene ID:
ENSAPLG00000008634
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008983
124094808 - 124113907
19100