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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12411237_12412025_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12411237 - 12412025
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TTTTCTCTCTCC
Flanking Amino Acid:
IFFDEIDAIGGARFDDGAGG
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
69.2
0.48
1
61
37.1
Major PPT
88.8
0.87
0.6
81.4
30.7
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
40.1
-0.7
3.7
70.61
41.1

Associated Gene:

Gene:
PSMC2
Ensembl Gene ID:
ENSAPLG00000011918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012451
12403316 - 12413116
9801