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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_124122174_124122759_R

Intron Information:

Intron Rank:
148867
Intron Class:
major
Intron Phase:
Intron Coordinates:
124122174 - 124122759
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAAGTAT
U12 Branch Point Sequence:
TTTTCTTTCCTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
43.8
-0.3
1.5
37.8
41.8
Major PPT
88.6
0.87
0.6
89
20.1
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
46.1
-0.2
3.6
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027555
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042170
124122116 - 124124553
2438